Stem-loop sequence ppe-MIR169i

Accession

MI0026090 (change log)

Description

Prunus persica miR169i stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

7 open access papers mention ppe-MIR169i
(20 sentences)

Stem-loop

         uu       u        -     aa     ag -u     u  u   u   -        au    u     ccu cc      --uu   a   g 
5' gcaaac  aaggaaa gaagagag ggucu  cauga  a  aagag cu guu ggu agccaagg  gacu gccug   g  uccuaa    cca gag a
   ||||||  ||||||| |||||||| |||||  |||||  |  ||||| || ||| ||| ||||||||  |||| |||||   |  ||||||    ||| ||| c
3' uguuug  uuucuuu cuucucuu ccaga  guacu  u  uucuc ga cag uca ucgguuuc  cuga cggac   c  gggauu    ggu cuc a
         --       -        u     cc     cu uc     u  -   u   a        cu    -     --u uu      uauu   -   g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG3: 27020399-27020594 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR169i

• ppe-MIR169i: chrG3: 27020399-27020594 [+]
• ppe-MIR169g: chrG3: 27020690-27020901 [+]

Database links

• miRBase Tracker:MI0026090

Mature sequence ppe-miR169i

• Accession: MIMAT0031462
• Sequence: 56 - uagccaaggaugacuugccugc - 77
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).