Stem-loop sequence ppe-MIR169k

Accession

MI0026092 (change log)

Description

Prunus persica miR169k stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

7 open access papers mention ppe-MIR169k
(20 sentences)

Stem-loop

   caaa             aa   u          ug         ug         - -----------       auuac 
5'     gcauugcauggaa  gaa agagucuaac  agccaagga  aauugccgg c           auuguau     c
       |||||||||||||  ||| ||||||||||  |||||||||  ||||||||| |           |||||||     c
3'     cguaacguaccuu  cuu ucucggguug  ucgguucuu  uuaacggcc g           uaacgua     c
   guac             -g   c          ua         gu         a cuguuuauauc       aaacu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 5660948-5661097 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR169k

• ppe-MIR169d: chrG1: 5662982-5663116 [+]
• ppe-MIR169k: chrG1: 5660948-5661097 [-]

Database links

• miRBase Tracker:MI0026092

Mature sequence ppe-miR169k

• Accession: MIMAT0031464
• Sequence: 35 - gagccaaggaugaauugccgg - 55
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).