Stem-loop ppe-MIR169l

Accession

MI0026093

Description

Prunus persica ppe-MIR169l precursor miRNA

Literature search

7 open access papers mention ppe-MIR169l
(22 sentences)

Sequence

200 reads, 231.0 reads per million, 16 experiments

uuuuucuaaagcauugcaUGGAAAAGAAUAGAGUCUAACUgagccaaggaugaauugccggcaucguauauuacgccucaaaaugcaaucuauauuuguugaccggcaauuuguucuuggcuaugUUGGGCUCUCUUCGUUCCAUGcaaugccaugaaaga
((((((....(((((((((((((..(((.((((((((((..((((((((((((((((((((((.((.((((...((........)).....)))).)).)).))))))))))))))))))))..)))))))))).))).)))))))))))))...))))))

Structure

      uaaa             AA   U          Ug                    -  u  u    --uac  cuc 
uuuuuc    gcauugcaUGGAA  GAA AGAGUCUAAC  agccaaggaugaauugccgg ca cg auau     gc   a
||||||    |||||||||||||  ||| ||||||||||  |||||||||||||||||||| || || ||||     ||    
agaaag    cguaacGUACCUU  CUU UCUCGGGUUg  ucgguucuuguuuaacggcc gu gu uaua     cg   a
      -uac             -G   C          ua                    a  u  u    ucuaa  uaa 

Annotation confidence Medium

Genome context

chrG1: 5641715-5641875 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR169l

Mature ppe-miR169l-5p

• Accession: MIMAT0031465
• Description: Prunus persica ppe-miR169l-5p mature miRNA
• Sequence: 19 - UGGAAAAGAAUAGAGUCUAACU - 40
• Evidence: experimental ; Illumina [1]

Mature ppe-miR169l-3p

• Accession: MIMAT0058530
• Description: Prunus persica ppe-miR169l-3p mature miRNA
• Sequence: 126 - UUGGGCUCUCUUCGUUCCAUG - 146
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149