Stem-loop sequence ppe-MIR172a

Accession

MI0026095 (change log)

Description

Prunus persica miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

9 open access papers mention ppe-MIR172a
(36 sentences)

Stem-loop

      c   gu    g gc                  acgcacaugcaauuaacuugaaaguuu 
5' agu guu  uugc g  guagcaucaucaagauuc                           c
   ||| |||  |||| |  ||||||||||||||||||                           u
3' uca caa  aacg c  cgucguaguaguucuaag                           c
      c   au    g ua                  agugaaacuuucuuugaaaccguuucu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG6: 7627706-7627832 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026095

Mature sequence ppe-miR172a-5p

• Accession: MIMAT0031468
• Sequence: 18 - guagcaucaucaagauucacg - 38
• Evidence: experimental; Illumina [1]

Mature sequence ppe-miR172a-3p

• Accession: MIMAT0031469
• Sequence: 92 - agaaucuugaugaugcugcau - 112
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).