Stem-loop sequence ppe-MIR395a

Accession

MI0026103 (change log)

Description

Prunus persica miR395a stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395a
(13 sentences)

Stem-loop

   gc          c  u  a                  u      u  uaugc 
5'   aucagauggc cc ag guucccucaaacacuuca uggaga ua     c
     |||||||||| || || |||||||||||||||||| |||||| ||      
3'   uaguuuacug gg uc cagggggguuugugaagu aucuuu au     u
   cc          a  u  c                  c      c  cucuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27742367-27742472 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395a

• ppe-MIR395e: chrG1: 27739475-27739582 [-]
• ppe-MIR395g: chrG1: 27739652-27739769 [-]
• ppe-MIR395l: chrG1: 27739824-27739926 [-]
• ppe-MIR395a: chrG1: 27742367-27742472 [+]

Database links

• miRBase Tracker:MI0026103

Mature sequence ppe-miR395a-5p

• Accession: MIMAT0031477
• Sequence: 20 - guucccucaaacacuucauu - 39
• Evidence: experimental; Illumina [1]

Mature sequence ppe-miR395a-3p

• Accession: MIMAT0031478
• Sequence: 69 - cugaaguguuuggggggaccc - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).