Stem-loop sequence ppe-MIR395e

Accession

MI0026107 (change log)

Description

Prunus persica miR395e stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention ppe-MIR395e
(15 sentences)

Stem-loop

                 a         ug         u     a   -au   uu 
5' gucaggugucaccg gaguucccu  aacacuuca uggga aua   uag  c
   |||||||||||||| |||||||||  ||||||||| ||||| |||   |||  u
3' uaguuuacgguggu cucaagggg  uugugaagu acccu ugu   auc  g
                 c         gu         c     a   auu   ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27739475-27739582 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395e

• ppe-MIR395a: chrG1: 27742367-27742472 [+]
• ppe-MIR395l: chrG1: 27739824-27739926 [-]
• ppe-MIR395g: chrG1: 27739652-27739769 [-]
• ppe-MIR395e: chrG1: 27739475-27739582 [-]

Database links

• miRBase Tracker:MI0026107

Mature sequence ppe-miR395e

• Accession: MIMAT0031483
• Sequence: 73 - cugaaguguuugggggaacuc - 93
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).