Stem-loop sequence ppe-MIR395g

Accession

MI0026109 (change log)

Description

Prunus persica miR395g stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395g
(13 sentences)

Stem-loop

   u  --u              a           cu       u     --a     ---  u 
5'  gu   gucaggugucacca gaguucccuca  cacuuca uggga   auaau   uc u
    ||   |||||||||||||| |||||||||||  ||||||| |||||   |||||   || u
3'  ca   uaguuuacgguggu cucaagggggu  gugaagu auccu   uauua   ag c
   a  uuu              c           uu       c     aua     acu  u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27739652-27739769 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395g

• ppe-MIR395a: chrG1: 27742367-27742472 [+]
• ppe-MIR395l: chrG1: 27739824-27739926 [-]
• ppe-MIR395g: chrG1: 27739652-27739769 [-]
• ppe-MIR395e: chrG1: 27739475-27739582 [-]

Database links

• miRBase Tracker:MI0026109

Mature sequence ppe-miR395g

• Accession: MIMAT0031485
• Sequence: 77 - cugaaguguuugggggaacuc - 97
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).