Stem-loop sequence ppe-MIR395h

Accession

MI0026110 (change log)

Description

Prunus persica miR395h stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395h
(13 sentences)

Stem-loop

            c   ua         ug c       uugggugaugaaccgauaaacgaucuuuuu 
5' gucagauga ccc  gaguuucuu  a cauuuca                              c
   ||||||||| |||  |||||||||  | |||||||                               
3' uaguuuacu ggg  cucaagggg  u gugaagu                              g
            a   uc         gu u       cauccuugaagauaaacucuuuauugaaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27723037-27723168 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395h

• ppe-MIR395m: chrG1: 27720832-27720962 [-]
• ppe-MIR395h: chrG1: 27723037-27723168 [+]

Database links

• miRBase Tracker:MI0026110

Mature sequence ppe-miR395h

• Accession: MIMAT0031486
• Sequence: 97 - cugaaguguuugggggaacuc - 117
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).