Stem-loop sequence ppe-MIR395m

Accession

MI0026115 (change log)

Description

Prunus persica miR395m stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395m
(13 sentences)

Stem-loop

        u  u cc            ug c       c      --  a  --uuuccaaa      c 
5' gucag ug c  cuagaguuuccc  a cacuuca ugggau  ca gc          acccuu a
   ||||| || |  ||||||||||||  | ||||||| ||||||  || ||          |||||| a
3' caguc ac g  ggucucaagggg  u gugaagu acccua  gu cg          ugggag c
        c  c uu            gu u       c      cc  a  uaccuuaaag      u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27720832-27720962 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395m

• ppe-MIR395h: chrG1: 27723037-27723168 [+]
• ppe-MIR395m: chrG1: 27720832-27720962 [-]

Database links

• miRBase Tracker:MI0026115

Mature sequence ppe-miR395m

• Accession: MIMAT0031491
• Sequence: 96 - cugaaguguuugggggaacuc - 116
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).