Stem-loop sequence ppe-MIR395n

Accession

MI0026116 (change log)

Description

Prunus persica miR395n stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395n
(13 sentences)

Stem-loop

                          ug c       u     --a      uu 
5' ucaggugucaccuagaguucucu  a cacuuca uggga   auaguc  c
   |||||||||||||||||||||||  | ||||||| |||||   ||||||  u
3' aguuuacgguggaucucaagggg  u gugaagu aucuu   uaucag  u
                          gu u       c     aca      cu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27764648-27764750 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395n

• ppe-MIR395b: chrG1: 27773971-27774095 [+]
• ppe-MIR395o: chrG1: 27768992-27769074 [+]
• ppe-MIR395n: chrG1: 27764648-27764750 [-]
• ppe-MIR395i: chrG1: 27764456-27764573 [-]
• ppe-MIR395c: chrG1: 27764279-27764386 [-]
• ppe-MIR395d: chrG1: 27764041-27764256 [-]
• ppe-MIR395j: chrG1: 27754874-27754989 [-]

Database links

• miRBase Tracker:MI0026116

Mature sequence ppe-miR395n

• Accession: MIMAT0031492
• Sequence: 69 - cugaaguguuugggggaacuc - 89
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).