Stem-loop sequence ppe-MIR395o

Accession

MI0026117 (change log)

Description

Prunus persica miR395o stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395o
(13 sentences)

Stem-loop

   -cu  a      uc          u    gauuauaugccc 
5'    ag guuccc  aaacacuuca ugga            c
      || ||||||  |||||||||| ||||             
3'    uc cagggg  uuugugaagu aucu            u
   gau  c      uu          c    aucuuucaucuc 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27768992-27769074 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395o

• ppe-MIR395d: chrG1: 27764041-27764256 [-]
• ppe-MIR395c: chrG1: 27764279-27764386 [-]
• ppe-MIR395i: chrG1: 27764456-27764573 [-]
• ppe-MIR395n: chrG1: 27764648-27764750 [-]
• ppe-MIR395o: chrG1: 27768992-27769074 [+]
• ppe-MIR395b: chrG1: 27773971-27774095 [+]

Database links

• miRBase Tracker:MI0026117

Mature sequence ppe-miR395o

• Accession: MIMAT0031493
• Sequence: 6 - guucccucaaacacuucauu - 25
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).