Stem-loop ppe-MIR399a

Accession

MI0026121

Description

Prunus persica ppe-MIR399a precursor miRNA

Literature search

5 open access papers mention ppe-MIR399a
(7 sentences)

Sequence

875 reads, 75.0 reads per million, 19 experiments

ugagcggauuaguuguaGGGCGUCUCUCCAUUGGCAGGcaaugaugauuuuguguucuuauaaguuaugaccCGCCAAAGGAGAGUUGCCCUUcgacugcuucugcuca
((((((((.((((((.((((((.((((((.(((((.((..(((((....(((((....))))))))))..)).))))).)))))).)))))).))))))..))))))))

Structure

        -u      u      U      A     A  ca     gauu     u 
ugagcgga  uaguug aGGGCG CUCUCC UUGGC GG  augau    uugug u
||||||||  |||||| |||||| |||||| ||||| ||  |||||    |||||  
acucgucu  gucagc UCCCGU GAGAGG AACCG cc  uauug    aauau c
        uc      U      U      A     C  ag     ----     u 

Annotation confidence High

Genome context

chrG5: 9979104-9979212 [-]

Mature ppe-miR399a-5p

• Accession: MIMAT0058551
• Description: Prunus persica ppe-miR399a-5p mature miRNA
• Sequence: 18 - GGGCGUCUCUCCAUUGGCAGG - 38
• Evidence: experimental ; unknown

Mature ppe-miR399a-3p

• Accession: MIMAT0031497
• Description: Prunus persica ppe-miR399a-3p mature miRNA
• Sequence: 73 - CGCCAAAGGAGAGUUGCCCUU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149