Stem-loop sequence ppe-MIR399k

Accession

MI0026131 (change log)

Description

Prunus persica miR399k stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention ppe-MIR399k
(5 sentences)

Stem-loop

   u    aa     --a        a      uu     uc        -  ---cu     c  a    gcu 
5'  uuca  uaagc   aagcaguc uagggc  cucuu  uuggcagg ca     gguga ug ugca   a
    ||||  |||||   |||||||| ||||||  |||||  |||||||| ||     ||||| || ||||    
3'  aagu  auucg   uucguuag aucccg  gagaa  aaccgucc gu     ucacu ac augu   c
   a    -a     guu        c      uu     ga        a  uacuu     a  -    aaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 43095221-43095356 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0026131

Mature sequence ppe-miR399k

• Accession: MIMAT0031507
• Sequence: 93 - ugccaaagaagaguugcccua - 113
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).