miRBase entry: ppe-MIR399k

Stem-loop ppe-MIR399k


Accession
MI0026131
Description
Prunus persica ppe-MIR399k precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
4 open access papers mention ppe-MIR399k
(5 sentences)

Sequence

uuucaaauaagcaaagcagucauagggcuucucuuucuuggcaggcacuggugacugaugcagcuacaaauguacaaucacuuucauugaccUGCCAAAGAAGAGUUGCCCUAcgauugcuuuuggcuuaaugaaa
.((((..((((((((((((((.((((((..((((((.((((((((((..(((((.((.((((........)))))).))))).....)).)))))))).))))))..)))))).)))))))))..))))).)))).

Structure
u    aa     --         a      uu      c        -  ---cu     c  a    gcu 
 uuca  uaagc  aaagcaguc uagggc  cucuuu uuggcagg ca     gguga ug ugca   a
 ||||  |||||  ||||||||| ||||||  |||||| |||||||| ||     ||||| || ||||    
 aagu  auucg  uuucguuag AUCCCG  GAGAAG AACCGUcc gu     ucacu ac augu   c
a    -a     gu         c      UU      A        a  uacuu     a  -    aaa 


Annotation confidence Not enough data
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Genome context
chrG1: 43095221-43095356 [-]

Database links

Mature ppe-miR399k

Accession MIMAT0031507
Description Prunus persica ppe-miR399k mature miRNA
Sequence 93 - UGCCAAAGAAGAGUUGCCCUA - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149