Stem-loop sequence ppe-MIR482f

Accession

MI0026136 (change log)

Description

Prunus persica miR482f stem-loop

Gene family

MIPF0000403; MIR482

Literature search

2 open access papers mention ppe-MIR482f
(6 sentences)

Stem-loop

     --u     ua   ag          ugc   u        -a          ag   -gga         u 
5' gg   gggga  gga  ggcuugagga   ugu ggaguggg  gagugggaaa  aau    ucucuuugg u
   ||   |||||  |||  ||||||||||   ||| ||||||||  ||||||||||  |||    ||||||||| g
3' cc   cccuu  ccu  uuggauuccu   acg ccuuaccc  cucauccuuu  uua    agggaaacu g
     uuu     uc   cu          uua   u        ac          cu   aaca         u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 30625526-30625670 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR482f

• ppe-MIR482a: chrG1: 30620009-30620128 [+]
• ppe-MIR482e: chrG1: 30620690-30620817 [+]
• ppe-MIR482b: chrG1: 30622467-30622602 [+]
• ppe-MIR482f: chrG1: 30625526-30625670 [+]

Database links

• miRBase Tracker:MI0026136

Mature sequence ppe-miR482f

• Accession: MIMAT0031512
• Sequence: 90 - ucuuuccuacuccacccauucc - 111
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).