Stem-loop sequence ppe-MIR535b

AccessionMI0026139 (change log)
DescriptionPrunus persica miR535b stem-loop
Gene family MIPF0000136; MIR535
Literature search

3 open access papers mention ppe-MIR535b
(5 sentences)

Stem-loop 
   -----     g   uau   u   gu   u                         cg   c     aa 
5'      gagcc agc   gau gac  ugu ugacgacgagagagagcacgcuugu  gca ccaug  a
        ||||| |||   ||| |||  ||| |||||||||||||||||||||||||  ||| |||||  g
3'      cuugg ucg   cua cug  aca acuguuguucucucucgugcgggca  ugu gguac  g
   cuagg     -   --u   u   --   u                         uu   a     cg
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2) Overlapping transcripts
chrG8: 18430310-18430438 [+]
intergenic
Clustered miRNAs
< 10kb from ppe-MIR535b
ppe-MIR535bchrG8: 18430310-18430438 [+]
ppe-MIR535achrG8: 18434050-18434154 [+]
Database links

Mature sequence ppe-miR535b

Accession MIMAT0031515
Sequence

26 -  

ugacgacgagagagagcacgc

 - 46

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).