Stem-loop ppe-MIR7122b

Accession

MI0026149

Description

Prunus persica ppe-MIR7122b precursor miRNA

Gene family

MIPF0000771; MIR1509

Literature search

1 open access papers mention ppe-MIR7122b
(3 sentences)

Sequence

ggguucauuccauuuuuUUAUACAAUGAAAUCACGGUCGagaaaagaacagaagauucuuucuaucucucucucucuacucucugCCGUGUUUCCUUGUAUAAAGagauguacuggaccc
(((((((...(((((((((((((((.((((.((((((.((((..(((..(((((((.......)))).)))...)))..)))).)))))))))).)))))))))))))))...)))))))

Structure

       uuc               U    U      C    aa   -ac   -    uc 
ggguuca   cauuuuuUUAUACAA GAAA CACGGU Gaga  aga   aga agau  u
|||||||   ||||||||||||||| |||| |||||| ||||  |||   ||| ||||  u
cccaggu   guagaGAAAUAUGUU CUUU GUGCCg cucu  ucu   ucu ucua  u
       cau               C    -      u    ca   cuc   c    uc 

Annotation confidence Not enough data

Genome context

chrG1: 2244304-2244423 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR7122b

Mature ppe-miR7122b-5p

• Accession: MIMAT0031529
• Description: Prunus persica ppe-miR7122b-5p mature miRNA
• Sequence: 18 - UUAUACAAUGAAAUCACGGUCG - 39
• Evidence: experimental ; Illumina [1]

Mature ppe-miR7122b-3p

• Accession: MIMAT0031530
• Description: Prunus persica ppe-miR7122b-3p mature miRNA
• Sequence: 86 - CCGUGUUUCCUUGUAUAAAG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149