Stem-loop sequence ppe-MIR3627

Accession

MI0026152 (change log)

Description

Prunus persica miR3627 stem-loop

Gene family

MIPF0001471; MIR3627

Literature search

2 open access papers mention ppe-MIR3627
(18 sentences)

Stem-loop

         -    a   a  u         a              -    -  a 
5' aaguug aggg uuu ug ucgcaggag gauggcacugucug uggu gc a
   |||||| |||| ||| || ||||||||| |||||||||||||| |||| || c
3' uucaau uccc aaa ac aguguccuc cuacugugguagac acca cg u
         a    a   g  c         c              g    u  a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG3: 25329223-25329326 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR3627

• ppe-MIR3627: chrG3: 25329223-25329326 [-]
• ppe-MIR5225: chrG3: 25326751-25326894 [-]

Database links

• miRBase Tracker:MI0026152

Mature sequence ppe-miR3627-5p

• Accession: MIMAT0031534
• Sequence: 19 - ucgcaggagagauggcacuguc - 40
• Evidence: experimental; Illumina [1]

Mature sequence ppe-miR3627-3p

• Accession: MIMAT0031535
• Sequence: 66 - uggugucaucccuccugugacc - 87
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).