Stem-loop ppe-MIR858

Accession

MI0026169

Description

Prunus persica ppe-MIR858 precursor miRNA

Gene family

MIPF0001138; MIR858

Literature search

3 open access papers mention ppe-MIR858
(21 sentences)

Sequence

ggugacugauuuccaugcuaaaccucgucaagugaacaguuuucuuucagguuauaucuuuauCUCGUUGUCUGUUCGACCUUGaacuucaacuucauuuuuauuauuuauaugcauaauuauucauucugaaucugcacugcacccuuucccuguccacacacacucacgaaaacuaacauauagcagccguuucgauaaaucgaaaucaaguuuaauccucugcauuuuauaacauugauugaguaaguagagaucucaaguuuaggucauaaaucggaaaguaauuauuuugugguaaugaacuaauaauaagcugagaucaaggucaaacaggcaacaaaguugagguauuaguaagaacuguuugcuugacgggggcuuuguauggacaucaaccucc
(((...((((.(((((((....((((((((((((((((((..((((.......(((((((......((((((((((.((((((((...........................((((.....(((((...))))).))))((((..........................................))))..(((((((....)))))))...........((((((...((((..((.....)).)))))))))).(((((.(((((((((((..((((.(((((....))))).)))).))).))).....)))))))))))))))))).))))))))))......)))))))....)))))))))))))))))))))).....))))))).)))))))...

Structure

---   gac    u       -uaaa                  uu    ucagguu       uauCUC          C        acuucaacuucauuuuuauuauuuauaugcauaauuauucauucugaaucugcacugcacccuuucccuguccacacacacucacgaaaacuaacauauagcagccguuucgauaaaucgaaaucaaguuuaauccucugcauuuuauaacauugauugaguaaguagaga     a     -----   -   aa    g     a 
   ggu   ugau uccaugc     ccucgucaagugaacagu  ucuu       auaucuu      GUUGUCUGUU GACCUUGa                                                                                                                                                                           ucuca guuua     ggu cau  aucg aaagu a
   |||   |||| |||||||     ||||||||||||||||||  ||||       |||||||      |||||||||| ||||||||                                                                                                                                                                           ||||| |||||     ||| |||  |||| |||||  
   cca   acua agguaug     ggggcaguucguuuguca  agaa       uauggag      caacggacaa cuggaacu                                                                                                                                                                           agagu cgaau     uca gua  uggu uuuua u
ccu   ---    c       uuucg                  --    ---ugau       uugaaa          a        ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------     -     aauaa   a   -a    g     u 

Annotation confidence Not enough data

Genome context

chrG5: 17621572-17621974 [+]

Mature ppe-miR858

• Accession: MIMAT0031567
• Description: Prunus persica ppe-miR858 mature miRNA
• Sequence: 64 - CUCGUUGUCUGUUCGACCUUG - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149