Stem-loop sequence ppe-MIR858

AccessionMI0026169 (change log)
DescriptionPrunus persica miR858 stem-loop
Gene family MIPF0001138; MIR858
Literature search

3 open access papers mention ppe-MIR858
(21 sentences)

Stem-loop 
   ---   gac    u       -uaaa          ug      uu    ucagguu       uau  -c          c        a  u  a   c   -----         u   ugc         ca      aucugcacugcacccuuucccuguccacacacacucacgaaaacuaacauauagcagccguuucgauaaau 
5'    ggu   ugau uccaugc     ccucgucaag  aacagu  ucuu       auaucuu   cu  guugucuguu gaccuuga cu ca cuu auu     uuuauuauu aua   auaauuauu  uucuga                                                                       c
      |||   |||| |||||||     ||||||||||  ||||||  ||||       |||||||   ||  |||||||||| |||||||| || || ||| |||     ||||||||| |||   |||||||||  ||||||                                                                        
3'    cca   acua agguaug     ggggcaguuc  uuguca  agaa       uauggag   ga  caacggacaa cuggaacu ga gu gaa uaa     aaguaaugg ugu   uauuaauga  aaggcu                                                                       g
   ccu   ---    c       uuucg          gu      --    ---ugau       -uu  aa          a        a  -  c   -   uaauc         -   -uu         --      aaauacuggauuugaacucuagagaugaaugaguuaguuacaauauuuuacgucuccuaauuugaacuaaa
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2) Overlapping transcripts
chrG5: 17621572-17621974 [+]
intergenic
Database links

Mature sequence ppe-miR858

Accession MIMAT0031567
Sequence

64 -  

cucguugucuguucgaccuug

 - 84

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).