miRBase entry: bma-mir-307

Stem-loop bma-mir-307


Accession
MI0026299
Description
Brugia malayi bma-mir-307 precursor miRNA
Gene family
MIPF0000293; mir-67


Sequence

cugaaaagguugcauggcguucagcuuacucagcugguuguaugauguuauccggaauuccuucaguucaUCACAACCUCCUUGAGUAAGCGGAcugcuuucuuaaccuuucgucccc
.(((((.(((((...(((((((.((((((((((..((((((..((((......((....)).......))))))))))..).))))))))))))).)))....)))))))))).....

Structure
----c     a     -cau   -    a         - cu      au    -uuaucc  a 
     ugaaa gguug    ggc guuc gcuuacuca g  gguugu  gaug       gg a
     ||||| |||||    ||| |||| ||||||||| |  ||||||  ||||       ||  
     gcuuu ccaau    ucg cAGG CGAAUGAGU C  CCAACA  CUac       cc u
ccccu     -     ucuu   u    -         U CU      --    uugacuu  u 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold22: 276999-277116 [+]

Database links

Mature bma-miR-307

Accession MIMAT0031748
Description Brugia malayi bma-miR-307 mature miRNA
Sequence 71 - UCACAACCUCCUUGAGUAAGCGGA - 94
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498