miRBase entry: bma-mir-49

Stem-loop bma-mir-49


Accession
MI0026306
Description
Brugia malayi bma-mir-49 precursor miRNA


Sequence

caucucaaaagccaggacggucaguagcuucauauguguucuucguugauaaguacacuuuguuguauugaaaaugauauucgAAGCACCAUGUGAAGCUGCUCUcugaccuuggaugaauuuccguag
.............(((.(((..((((((((((((((.((.(((((......((((((......))))))............))))).))))))))))))))))..))).))).(((......)))....

Structure
----caucucaaaagcc   a   uc              u  u     ------uugaua      cu 
                 agg cgg  aguagcuucauaug gu cuucg            aguaca  u
                 ||| |||  |||||||||||||| || |||||            ||||||   
                 ucc guc  UCGUCGAAGUGUAC CA GAAgc            uuaugu  u
gaugccuuuaaguaggu   a   UC              -  C     uuauaguaaaag      ug 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold56: 93835-93963 [+]

Database links

Mature bma-miR-49

Accession MIMAT0031751
Description Brugia malayi bma-miR-49 mature miRNA
Sequence 84 - AAGCACCAUGUGAAGCUGCUCU - 105
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498