miRBase entry: bma-mir-5365b

Stem-loop bma-mir-5365b


Accession
MI0026312
Description
Brugia malayi bma-mir-5365b precursor miRNA

Literature search
1 open access papers mention bma-mir-5365b
(1 sentences)

Sequence

uauuacaauuuuuucguuugucuucucuuaaucguauaagugugggugaUGAUUAAGAGAACACAAUCGAAUuugcuguaau
.((((((.....((((.((((.(((((((((((((((........)).))))))))))))).)))).)))).....))))))

Structure
u      auuuu    u    c             -  aag 
 auuaca     uucg uugu uucucuuaaucgu au   u
 ||||||     |||| |||| ||||||||||||| ||    
 uaaugu     AAGC AACA AAGAGAAUUAGUa ug   g
-      cguuU    U    C             g  ggu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold33: 146574-146655 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5365b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5365b

Accession MIMAT0031757
Description Brugia malayi bma-miR-5365b mature miRNA
Sequence 50 - UGAUUAAGAGAACACAAUCGAAU - 72
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498