miRBase entry: bma-mir-84-1

Stem-loop bma-mir-84-1


Accession
MI0026316
Description
Brugia malayi bma-mir-84-1 precursor miRNA
Gene family
MIPF0000250; mir-84

Literature search
1 open access papers mention bma-mir-84-1
(3 sentences)

Sequence

uuuccaauugcaaugaggcugcUGAGGUAGUUUAUAAAGCUGCGAgagaaaaucaaacucGCAGAUUUUAAGCUAUCUCCACugccuuuauugcaugauucuuu
........(((((((((((.(..(((((((((((.(((.(((((((...........))))))).))))))))))))))..).))).)))))))).........

Structure
-uuuccaau        -   u cU           U   G       agaa 
         ugcaauga ggc g  GAGGUAGUUUA AAA CUGCGAg    a
         |||||||| ||| |  ||||||||||| ||| |||||||    a
         acguuauu ccg C  CUCUAUCGAAU UUU GACGcuc    u
uuucuuagu        u   u AC           -   A       aaac 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold7: 1916768-1916871 [-]

Database links

Mature bma-miR-84-5p

Accession MIMAT0031761
Description Brugia malayi bma-miR-84-5p mature miRNA
Sequence 23 - UGAGGUAGUUUAUAAAGCUGCGA - 45
Evidence experimental
Illumina [2]

Mature bma-miR-84-3p

Accession MIMAT0031864
Description Brugia malayi bma-miR-84-3p mature miRNA
Sequence 61 - GCAGAUUUUAAGCUAUCUCCAC - 82
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498