miRBase entry: ssa-let-7j

Stem-loop ssa-let-7j


Accession
MI0026422
Description
Salmo salar ssa-let-7j precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7j
(5 sentences)

Sequence

UGAGGUAGUAGGUUGGAUAGUUuuagggucacacccacacugggagauaaCUGUACAACCUACUGUCUUUCU
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure
--U              G      uuagg   aca    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   UUCUGUCAUCCAAC UGUCaa     uag   gggu  
UCU              A      -----   --a    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-let-7j-5p

Accession MIMAT0032263
Description Salmo salar ssa-let-7j-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGGAUAGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7j-3p

Accession MIMAT0032264
Description Salmo salar ssa-let-7j-3p mature miRNA
Sequence 51 - CUGUACAACCUACUGUCUUUCU - 72
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482