miRBase entry: ssa-let-7i-1

Stem-loop ssa-let-7i-1


Accession
MI0026429
Description
Salmo salar ssa-let-7i-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7i-1
(5 sentences)

Sequence

UGAGGUAGUAGUUUGUGCUGUUggucggguugugacauggccugcuguggagauaaCUGCGCAAACGACUACCUUGCC
.((((((((.((((((((.(((((.((((((((...))))))))))........))).)))))))).))))))))...

Structure
--U        A        U   --------  u        g 
   GAGGUAGU GUUUGUGC GUU        gg cggguugu  
   |||||||| |||||||| |||        || |||||||| a
   UUCCAUCA CAAACGCG Caa        uc guccggua  
CCG        G        U   uagaggug  -        c 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7i-5p

Accession MIMAT0032274
Description Salmo salar ssa-let-7i-5p mature miRNA
Sequence 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7i-3p

Accession MIMAT0032275
Description Salmo salar ssa-let-7i-3p mature miRNA
Sequence 57 - CUGCGCAAACGACUACCUUGCC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482