miRBase entry: ssa-let-7i-2

Stem-loop ssa-let-7i-2


Accession
MI0026430
Description
Salmo salar ssa-let-7i-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ssa-let-7i-2
(5 sentences)

Sequence

UGAGGUAGUAGUUUGUGCUGUUgguuggguuaugacauuucccgcuauggagaugaCUGCGCAAGCUACUGCCUUGCC
.(((((((((((((((((.((..............(((((((......))))))))).)))))))))))))))))...

Structure
--U                 U  Ugguuggguuauga       cg 
   GAGGUAGUAGUUUGUGC GU              cauuucc  c
   ||||||||||||||||| ||              |||||||   
   UUCCGUCAUCGAACGCG Ca              guagagg  u
CCG                 U  --------------       ua 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-let-7i-5p

Accession MIMAT0032274
Description Salmo salar ssa-let-7i-5p mature miRNA
Sequence 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
Evidence experimental
Illumina [1]

Mature ssa-let-7i-2-3p

Accession MIMAT0032276
Description Salmo salar ssa-let-7i-2-3p mature miRNA
Sequence 57 - CUGCGCAAGCUACUGCCUUGCC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482