miRBase entry: ssa-mir-101a-2

Stem-loop ssa-mir-101a-2


Accession
MI0026434
Description
Salmo salar ssa-mir-101a-2 precursor miRNA
Gene family
MIPF0000046; mir-101

Literature search
1 open access papers mention ssa-mir-101a-2
(6 sentences)

Sequence

UCAGUUAUCACUGUGCUGAUGCUguccauuuuaaaggUACAGUACUGUGAUAACUGAAG
(((((((((((.((((((.((((............)))))))))).)))))))))))..

Structure
--           U      A    gucca 
  UCAGUUAUCAC GUGCUG UGCU     u
  ||||||||||| |||||| ||||      
  AGUCAAUAGUG CAUGAC AUgg     u
GA           U      -    aaauu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-101a-5p

Accession MIMAT0032280
Description Salmo salar ssa-miR-101a-5p mature miRNA
Sequence 1 - UCAGUUAUCACUGUGCUGAUGCU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-101a-3p

Accession MIMAT0032281
Description Salmo salar ssa-miR-101a-3p mature miRNA
Sequence 38 - UACAGUACUGUGAUAACUGAAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482