Stem-loop ssa-mir-107

Accession

MI0026441

Description

Salmo salar ssa-mir-107 precursor miRNA

Gene family

MIPF0000024; mir-103

Literature search

1 open access papers mention ssa-mir-107
(10 sentences)

Sequence

AGCUUCUUUACAGUGUUGCCUUGuggcauggagaucaAGCAGCAUUGUACAGGGCUAUC
((((.((.(((((((((((.(((............)))))))))))))).))))))...

Structure

---    U  U           C   uggca 
   AGCU CU UACAGUGUUGC UUG     u
   |||| || ||||||||||| |||      
   UCGG GA AUGUUACGACG Aac     g
CUA    -  C           -   uagag 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-107-5p

• Accession: MIMAT0032290
• Description: Salmo salar ssa-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-107-3p

• Accession: MIMAT0032291
• Description: Salmo salar ssa-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482