Stem-loop ssa-mir-125a-1

Accession

MI0026452

Description

Salmo salar ssa-mir-125a-1 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

1 open access papers mention ssa-mir-125a-1
(1 sentences)

Sequence

UCCCUGAGACCCUAACUUGUGAcuuuuuccugugaugugcACGGGUUGGGUUCUCGGGAGCU
..(((((((.(((((((((((((.((.......)).)).))))))))))).)))))))....

Structure

--UC       C           -  u  uu 
    CCUGAGA CCUAACUUGUG Ac uu  c
    ||||||| ||||||||||| || ||  c
    GGGCUCU GGGUUGGGCAc ug ag  u
UCGA       U           g  u  ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-125a-5p

• Accession: MIMAT0032304
• Description: Salmo salar ssa-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUAACUUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-125a-3p

• Accession: MIMAT0032305
• Description: Salmo salar ssa-miR-125a-3p mature miRNA
• Sequence: 41 - ACGGGUUGGGUUCUCGGGAGCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482