miRBase entry: ssa-mir-125b-3

Stem-loop ssa-mir-125b-3


Accession
MI0026456
Description
Salmo salar ssa-mir-125b-3 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
3 open access papers mention ssa-mir-125b-3
(9 sentences)

Sequence

UCCCUGAGACCCUUAACCUGUGAcuacuuuaaaggucACAGGUGAGGACCUUGGGAACA
((((.(((..(((((.(((((((((........))))))))))))))..)))))))...

Structure
---    U   AC     A         acu 
   UCCC GAG  CCUUA CCUGUGAcu   u
   |||| |||  ||||| |||||||||    
   AGGG UUC  GGAGU GGACAcugg   u
ACA    -   CA     -         aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-125b-5p

Accession MIMAT0032307
Description Salmo salar ssa-miR-125b-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUUAACCUGUGA - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-125b-3-3p

Accession MIMAT0032310
Description Salmo salar ssa-miR-125b-3-3p mature miRNA
Sequence 38 - ACAGGUGAGGACCUUGGGAACA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482