miRBase entry: ssa-mir-133a-2

Stem-loop ssa-mir-133a-2


Accession
MI0026484
Description
Salmo salar ssa-mir-133a-2 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

AGCUGGUAAAAUGGAACCAAAucaacuguugaauggauUUGGUCCCCUUCAACCAGCUGU
(((((((..((.((.((((((((............)))))))).)).))..)))))))..

Structure
--       AA  U  A        aacug 
  AGCUGGU  AA GG ACCAAAuc     u
  |||||||  || || ||||||||      
  UCGACCA  UU CC UGGUUuag     u
UG       AC  C  C        guaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-133a-5p

Accession MIMAT0032337
Description Salmo salar ssa-miR-133a-5p mature miRNA
Sequence 1 - AGCUGGUAAAAUGGAACCAAA - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-133a-3p

Accession MIMAT0032338
Description Salmo salar ssa-miR-133a-3p mature miRNA
Sequence 39 - UUGGUCCCCUUCAACCAGCUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482