miRBase entry: ssa-mir-135b-3

Stem-loop ssa-mir-135b-3


Accession
MI0026488
Description
Salmo salar ssa-mir-135b-3 precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
1 open access papers mention ssa-mir-135b-3
(1 sentences)

Sequence

UAUGGCUUUCUAUUCCUAUGUGAuuuuuucuacugucACAUAGGGUCCAAAGCCAUUG
.((((((((....(((((((((((..........)))))))))))...))))))))..

Structure
-U        CUAU           uuuu 
  AUGGCUUU    UCCUAUGUGAu    u
  ||||||||    |||||||||||     
  UACCGAAA    GGGAUACAcug    c
GU        -CCU           ucau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-135b-5p

Accession MIMAT0032344
Description Salmo salar ssa-miR-135b-5p mature miRNA
Sequence 1 - UAUGGCUUUCUAUUCCUAUGUGA - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-135b-3-3p

Accession MIMAT0032347
Description Salmo salar ssa-miR-135b-3-3p mature miRNA
Sequence 38 - ACAUAGGGUCCAAAGCCAUUG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482