miRBase entry: ssa-mir-139-2

Stem-loop ssa-mir-139-2


Accession
MI0026498
Description
Salmo salar ssa-mir-139-2 precursor miRNA
Gene family
MIPF0000117; mir-139

Literature search
1 open access papers mention ssa-mir-139-2
(3 sentences)

Sequence

UCUACAGUGCAUGUGUCUCCAGUgaauaugagcuacUGGAGAGGCAGUUCUGUGUGAGU
(((((((.((.(((.(((((((((.........))))))))).))))).))))).))..

Structure
--  -     U  A   G         aau 
  UC UACAG GC UGU UCUCCAGUg   a
  || ||||| || ||| |||||||||   u
  AG GUGUC UG ACG AGAGGUcau   g
UG  U     U  -   G         cga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-139-5p

Accession MIMAT0032356
Description Salmo salar ssa-miR-139-5p mature miRNA
Sequence 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-139-2-3p

Accession MIMAT0032358
Description Salmo salar ssa-miR-139-2-3p mature miRNA
Sequence 37 - UGGAGAGGCAGUUCUGUGUGAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482