miRBase entry: ssa-mir-145-1

Stem-loop ssa-mir-145-1


Accession
MI0026505
Description
Salmo salar ssa-mir-145-1 precursor miRNA
Gene family
MIPF0000079; mir-145

Literature search
2 open access papers mention ssa-mir-145-1
(4 sentences)

Sequence

GUCCAGUUUUCCCAGGAAUCCCUugggcaaucaacaacggggAUUCCUGGAAAUACUGUUCUU
...((((.((.((((((((((((((.........))..)))))))))))).)).)))).....

Structure
--GUC    U  C            --  ggc 
     CAGU UU CCAGGAAUCCCU  ug   a
     |||| || ||||||||||||  ||   a
     GUCA AA GGUCCUUAgggg  ac   u
UUCUU    U  A            ca  aac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-145-5p

Accession MIMAT0032369
Description Salmo salar ssa-miR-145-5p mature miRNA
Sequence 1 - GUCCAGUUUUCCCAGGAAUCCCU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-145-3p

Accession MIMAT0032370
Description Salmo salar ssa-miR-145-3p mature miRNA
Sequence 43 - AUUCCUGGAAAUACUGUUCUU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482