miRBase entry: ssa-mir-146a-3

Stem-loop ssa-mir-146a-3


Accession
MI0026509
Description
Salmo salar ssa-mir-146a-3 precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
3 open access papers mention ssa-mir-146a-3
(21 sentences)

Sequence

UGAGAACUGAAUUCCAUAGAUGGuaguugcucagauagacAUCUAUGGAUUCAGUUCUUCU
.(((((((((((.(((((((((...(((.....)))...))))))))))))))))))))..

Structure
-U           U         Gua   g 
  GAGAACUGAAU CCAUAGAUG   guu c
  ||||||||||| |||||||||   ||| u
  UUCUUGACUUA GGUAUCUAc   uag c
UC           -         aga   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-146a-5p

Accession MIMAT0032371
Description Salmo salar ssa-miR-146a-5p mature miRNA
Sequence 1 - UGAGAACUGAAUUCCAUAGAUGG - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-146a-3-3p

Accession MIMAT0032373
Description Salmo salar ssa-miR-146a-3-3p mature miRNA
Sequence 41 - AUCUAUGGAUUCAGUUCUUCU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482