miRBase entry: ssa-mir-15d

Stem-loop ssa-mir-15d


Accession
MI0026526
Description
Salmo salar ssa-mir-15d precursor miRNA
Gene family
MIPF0000006; mir-15


Sequence

UAGCAGCACAGAAUGGUUUGUggguuacacagagaugCAGGCCGUACUGUGCUGCCGCAGU
..(((((((((.((((((((((..((.....))..)))))))))).)))))))))......

Structure
----UA         A          gg  a 
      GCAGCACAG AUGGUUUGUg  uu c
      ||||||||| ||||||||||  || a
      CGUCGUGUC UGCCGGACgu  ag c
UGACGC         A          ag  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-15d-5p

Accession MIMAT0032401
Description Salmo salar ssa-miR-15d-5p mature miRNA
Sequence 1 - UAGCAGCACAGAAUGGUUUGU - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-15d-3p

Accession MIMAT0032402
Description Salmo salar ssa-miR-15d-3p mature miRNA
Sequence 38 - CAGGCCGUACUGUGCUGCCGCAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482