miRBase entry: ssa-mir-15e

Stem-loop ssa-mir-15e


Accession
MI0026527
Description
Salmo salar ssa-mir-15e precursor miRNA

Literature search
1 open access papers mention ssa-mir-15e
(1 sentences)

Sequence

AAGCAGCACAGAAUGGUUUGUggguaauacagggauaCAGGCUGUACUGUGCUGUUGCAGU
.((((((((((.((((((((((.............)))))))))).)))))))))).....

Structure
----A          A          gguaa 
     AGCAGCACAG AUGGUUUGUg     u
     |||||||||| ||||||||||     a
     UUGUCGUGUC UGUCGGACau     c
UGACG          A          aggga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-15e-5p

Accession MIMAT0032403
Description Salmo salar ssa-miR-15e-5p mature miRNA
Sequence 1 - AAGCAGCACAGAAUGGUUUGU - 21
Evidence experimental
Illumina [1]

Mature ssa-miR-15e-3p

Accession MIMAT0032404
Description Salmo salar ssa-miR-15e-3p mature miRNA
Sequence 38 - CAGGCUGUACUGUGCUGUUGCAGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482