Stem-loop ssa-mir-181a-5

Accession

MI0026540

Description

Salmo salar ssa-mir-181a-5 precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

4 open access papers mention ssa-mir-181a-5
(15 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugguauggaucacauaaaaACCAUCGACCGUUGACUGUGCC
.(((.((((((..(((((((.((((..((((.....)))).))))))))))))))))).)))...

Structure

--A   U      CU       A    gg    g 
   ACA UCAACG  GUCGGUG GUuu  uaug a
   ||| ||||||  ||||||| ||||  |||| u
   UGU AGUUGC  CAGCUAC CAaa  auac c
CCG   C      --       -    -a    a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-181a-5p

• Accession: MIMAT0032417
• Description: Salmo salar ssa-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181a-5-3p

• Accession: MIMAT0032422
• Description: Salmo salar ssa-miR-181a-5-3p mature miRNA
• Sequence: 44 - ACCAUCGACCGUUGACUGUGCC - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482