Stem-loop ssa-mir-181c

Accession

MI0026542

Description

Salmo salar ssa-mir-181c precursor miRNA

Gene family

MIPF0000007; mir-181

Literature search

4 open access papers mention ssa-mir-181c
(19 sentences)

Sequence

AACAUUCAUUGCUGUCGGUGGGuuugaugugaauauaacUCACUGAUCAAUGAAUGAACA
..(((((((((..(((((((((((..((....))..))))))))))))))))))))....

Structure

--AA         CU           ug  g 
    CAUUCAUUG  GUCGGUGGGuu  au u
    |||||||||  |||||||||||  ||  
    GUAAGUAAC  UAGUCACUcaa  ua g
ACAA         --           ua  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-181c-5p

• Accession: MIMAT0032425
• Description: Salmo salar ssa-miR-181c-5p mature miRNA
• Sequence: 1 - AACAUUCAUUGCUGUCGGUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-181c-3p

• Accession: MIMAT0032426
• Description: Salmo salar ssa-miR-181c-3p mature miRNA
• Sequence: 40 - UCACUGAUCAAUGAAUGAACA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482