miRBase entry: ssa-mir-183-3

Stem-loop ssa-mir-183-3


Accession
MI0026546
Description
Salmo salar ssa-mir-183-3 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
1 open access papers mention ssa-mir-183-3
(5 sentences)

Sequence

UAUGGCACUGGUAGAAUUCACUgugaaagcacacuaucagUGAAUUACCAUAGGGCCAUA
((((((..(((((..((((((((..(........)..)))))))))))))....))))))

Structure
      --AC     GA        ug aag 
UAUGGC    UGGUA  AUUCACUg  a   c
||||||    |||||  ||||||||  |    
AUACCG    ACCAU  UAAGUgac  u   a
      GGAU     --        ua cac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-183-5p

Accession MIMAT0032429
Description Salmo salar ssa-miR-183-5p mature miRNA
Sequence 1 - UAUGGCACUGGUAGAAUUCACU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-183-3p

Accession MIMAT0032430
Description Salmo salar ssa-miR-183-3p mature miRNA
Sequence 41 - UGAAUUACCAUAGGGCCAUA - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482