Stem-loop ssa-mir-196a-3

Accession

MI0026561

Description

Salmo salar ssa-mir-196a-3 precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

UAGGUAGUUUCAUGUUGUUGGGauucgcuuccuggcuCCGCAACAAGAAACUGCCUUGA
.((((((((((.((((((..(((...(((....)))))))))))).))))))))))...

Structure

--U          A      UG   uuc   u 
   AGGUAGUUUC UGUUGU  GGa   gcu c
   |||||||||| ||||||  |||   |||  
   UCCGUCAAAG ACAACG  CCu   cgg c
AGU          A      --   ---   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-196a-5p

• Accession: MIMAT0032453
• Description: Salmo salar ssa-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-196a-3-3p

• Accession: MIMAT0032456
• Description: Salmo salar ssa-miR-196a-3-3p mature miRNA
• Sequence: 38 - CCGCAACAAGAAACUGCCUUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482