Stem-loop ssa-mir-196a-4

Accession

MI0026562

Description

Salmo salar ssa-mir-196a-4 precursor miRNA

Gene family

MIPF0000031; mir-196

Sequence

UAGGUAGUUUCAUGUUGUUGGGauugacuuccuggcUCGGCAACAAGAAACUGCCUUGA
.((((((((((.((((((((((...(.....)...)))))))))).))))))))))...

Structure

--U          A          auu a 
   AGGUAGUUUC UGUUGUUGGG   g c
   |||||||||| ||||||||||   | u
   UCCGUCAAAG ACAACGGCUc   c u
AGU          A          ggu c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-196a-5p

• Accession: MIMAT0032453
• Description: Salmo salar ssa-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-196a-4-3p

• Accession: MIMAT0032457
• Description: Salmo salar ssa-miR-196a-4-3p mature miRNA
• Sequence: 37 - UCGGCAACAAGAAACUGCCUUGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482