miRBase entry: ssa-mir-199a-3

Stem-loop ssa-mir-199a-3


Accession
MI0026567
Description
Salmo salar ssa-mir-199a-3 precursor miRNA
Gene family
MIPF0000040; mir-199


Sequence

CCCAGUGUUCAGACUACCUGUUCauugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure
-C       U        C   U    guc 
  CCAGUGU CAGACUAC UGU Cauu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-199a-5p

Accession MIMAT0032460
Description Salmo salar ssa-miR-199a-5p mature miRNA
Sequence 1 - CCCAGUGUUCAGACUACCUGUUC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-199a-3p

Accession MIMAT0032461
Description Salmo salar ssa-miR-199a-3p mature miRNA
Sequence 40 - ACAGUAGUCUGCACAUUGGUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482