miRBase entry: ssa-mir-19d

Stem-loop ssa-mir-19d


Accession
MI0026576
Description
Salmo salar ssa-mir-19d precursor miRNA
Gene family
MIPF0000011; mir-19


Sequence

AGCUUUGCGGGGUGGGCAGUCAGCcuuuuuguaggagcagcUGUGCAAACCCAAGCAAAACUG
((.(((((.(((((.(((((...(((......)))....))))).)..))))..))))).)).

Structure
-  C     -G    -- G     -CAG   uu 
 AG UUUGC  GGGU  G GCAGU    Ccu  u
 || |||||  ||||  | |||||    |||   
 UC AAACG  CCCA  C UGUcg    gga  u
G  A     AA    AA G     acga   ug 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-19d-5p

Accession MIMAT0032469
Description Salmo salar ssa-miR-19d-5p mature miRNA
Sequence 1 - AGCUUUGCGGGGUGGGCAGUCAGC - 24
Evidence experimental
Illumina [1]

Mature ssa-miR-19d-3p

Accession MIMAT0032470
Description Salmo salar ssa-miR-19d-3p mature miRNA
Sequence 42 - UGUGCAAACCCAAGCAAAACUG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482