miRBase entry: ssa-mir-1-3

Stem-loop ssa-mir-1-3


Accession
MI0026577
Description
Salmo salar ssa-mir-1-3 precursor miRNA
Gene family
MIPF0000038; mir-1


Sequence

ACAUACUUCUUUAUGCGUCCAUAugaacaagaggaacuaUGGAAUGUAAAGAAGUAUGUAU
(((((((((((((((..((((((....(....)....)))))).)))))))))))))))..

Structure
--               CG      ugaa a 
  ACAUACUUCUUUAUG  UCCAUA    c a
  |||||||||||||||  ||||||    |  
  UGUAUGAAGAAAUGU  AGGUau    g g
UA               -A      caag a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-1-3-5p

Accession MIMAT0032471
Description Salmo salar ssa-miR-1-3-5p mature miRNA
Sequence 1 - ACAUACUUCUUUAUGCGUCCAUA - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-1-3p

Accession MIMAT0032472
Description Salmo salar ssa-miR-1-3p mature miRNA
Sequence 40 - UGGAAUGUAAAGAAGUAUGUAU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482