miRBase entry: ssa-mir-204-1

Stem-loop ssa-mir-204-1


Accession
MI0026590
Description
Salmo salar ssa-mir-204-1 precursor miRNA
Gene family
MIPF0000042; mir-204


Sequence

UUCCCUUUGUCAUCCUAUGCCUggagaucaugauaagGCAGGGACAGCAAAGGGAUGC
.(((((((((..((((.(((((.............)))))))))..)))))))))...

Structure
--U         CA    A     ggaga 
   UCCCUUUGU  UCCU UGCCU     u
   |||||||||  |||| |||||     c
   AGGGAAACG  AGGG ACGga     a
CGU         AC    -     auagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-204-5p

Accession MIMAT0032488
Description Salmo salar ssa-miR-204-5p mature miRNA
Sequence 1 - UUCCCUUUGUCAUCCUAUGCCU - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-204-3p

Accession MIMAT0032489
Description Salmo salar ssa-miR-204-3p mature miRNA
Sequence 38 - GCAGGGACAGCAAAGGGAUGC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482