miRBase entry: ssa-mir-210-1

Stem-loop ssa-mir-210-1


Accession
MI0026605
Description
Salmo salar ssa-mir-210-1 precursor miRNA
Gene family
MIPF0000086; mir-210

Literature search
1 open access papers mention ssa-mir-210-1
(4 sentences)

Sequence

AGCCACUGACUAACGUACAUUGcgccuaucccaauuccaccaCUGUGCGUGUGACAGCGGCU
((((.(((.(..(((((((.((.(...............))).)))))))..).))).))))

Structure
    A   A UA       U  c ccuauc 
AGCC CUG C  ACGUACA UG g      c
|||| ||| |  ||||||| || |      c
UCGG GAC G  UGCGUGU ac c      a
    C   A UG       C  - accuua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-210-5p

Accession MIMAT0032508
Description Salmo salar ssa-miR-210-5p mature miRNA
Sequence 1 - AGCCACUGACUAACGUACAUUG - 22
Evidence experimental
Illumina [1]

Mature ssa-miR-210-3p

Accession MIMAT0032509
Description Salmo salar ssa-miR-210-3p mature miRNA
Sequence 43 - CUGUGCGUGUGACAGCGGCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482