miRBase entry: ssa-mir-212b-1

Stem-loop ssa-mir-212b-1


Accession
MI0026609
Description
Salmo salar ssa-mir-212b-1 precursor miRNA
Gene family
MIPF0000065; mir-132


Sequence

ACCUUGGCUCUAGACUGCUUACUgcuuaaaacucagugaaacuacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....................))))))))))))).))))).))..

Structure
-A  U     C       C      cuuaaaacu 
  CC UGGCU UAGACUG UUACUg         c
  || ||||| ||||||| ||||||          
  GG ACUGA AUCUGAC AAUgac         a
UC  U     C       -      aucaaagug 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature ssa-miR-212b-5p

Accession MIMAT0032512
Description Salmo salar ssa-miR-212b-5p mature miRNA
Sequence 1 - ACCUUGGCUCUAGACUGCUUACU - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-212b-3p

Accession MIMAT0032513
Description Salmo salar ssa-miR-212b-3p mature miRNA
Sequence 48 - UAACAGUCUACAGUCAUGGCU - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482