Stem-loop ssa-mir-219c-1

Accession

MI0026624

Description

Salmo salar ssa-mir-219c-1 precursor miRNA

Gene family

MIPF0000044; mir-219

Sequence

UGAUUGUCCAAACGCAAUUCUUGugucugccuccaugaaaccAGGAGUUGUGGAUGGACAUC
....((((((..(((((((((((.((.............)))))))))))))..))))))..

Structure

UGAU      AA           u  cugcc 
    UGUCCA  CGCAAUUCUUG gu     u
    ||||||  ||||||||||| ||     c
    ACAGGU  GUGUUGAGGAc ca     c
--CU      AG           -  aagua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-219c-5p

• Accession: MIMAT0032530
• Description: Salmo salar ssa-miR-219c-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-219c-3p

• Accession: MIMAT0032531
• Description: Salmo salar ssa-miR-219c-3p mature miRNA
• Sequence: 43 - AGGAGUUGUGGAUGGACAUC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482