miRBase entry: ssa-mir-221

Stem-loop ssa-mir-221


Accession
MI0026629
Description
Salmo salar ssa-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
2 open access papers mention ssa-mir-221
(8 sentences)

Sequence

ACCUAGCAUACAAUGUAGAUUUCugugugguuuaaacuacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((((.......)).))))))))))))).))))))))..

Structure
--        U         AUUU    -  gg 
  ACCUAGCA ACAAUGUAG    Cugu gu  u
  |||||||| |||||||||    |||| ||  u
  UGGGUCGU UGUUACAUC    GAca ca  u
UU        C         ----    u  aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ssa-miR-221-3p

Accession MIMAT0032538
Description Salmo salar ssa-miR-221-3p mature miRNA
Sequence 1 - ACCUAGCAUACAAUGUAGAUUUC - 23
Evidence experimental
Illumina [1]

Mature ssa-miR-221-5p

Accession MIMAT0032539
Description Salmo salar ssa-miR-221-5p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23865519
    Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
    Andreassen R, Worren MM, Høyheim B
    BMC Genomics (2013) 14:482