Stem-loop ssa-mir-25-2

Accession

MI0026647

Description

Salmo salar ssa-mir-25-2 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

4 open access papers mention ssa-mir-25-2
(24 sentences)

Sequence

AGGCGGAGUCUUGGGCAAUUGCCagcaaucuuaaggggCAUUGCACUUGUCUCGGUCUGA
((((.(((.(..(.(((((.(((..(........).)))))))).)..).))).))))..

Structure

--    G   U UU G     U   ag aau 
  AGGC GAG C  G GCAAU GCC  c   c
  |||| ||| |  | ||||| |||  |    
  UCUG CUC G  C CGUUA Cgg  g   u
AG    G   U UU A     -   -g aau 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-25-5p

• Accession: MIMAT0032560
• Description: Salmo salar ssa-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGUCUUGGGCAAUUGCC - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-25-3p

• Accession: MIMAT0032561
• Description: Salmo salar ssa-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482